Avianca Ecuador serves the following destinations:
| Country | City | Airport | Notes | Refs |
|---|---|---|---|---|
| Oranjestad | Queen Beatrix International Airport | Via Bogotá | ||
| Santa Cruz de la Sierra | Viru Viru International Airport | Terminated | ||
| La Paz | El Alto International Airport | Via Lima | ||
| Bogotá | El Dorado International Airport | |||
| Cali | Alfonso Bonilla Aragón International Airport | |||
| Medellín | José María Córdova International Airport | Terminated | ||
| Willemstad | Curaçao International Airport | Terminated | ||
| Baltra Island | Seymour Airport | |||
| Cuenca | Mariscal Lamar International Airport | [1] | ||
| Guayaquil | José Joaquín de Olmedo International Airport | Hub | ||
| Manta | Eloy Alfaro International Airport | |||
| Nueva Loja | Lago Agrio Airport | [2] | ||
| Puerto Francisco de Orellana | Francisco de Orellana Airport | |||
| Quito | Mariscal Sucre International Airport | Hub | ||
| San Cristóbal Island | San Cristóbal Airport | |||
| Panama City | Tocumen International Airport | Via Bogotá | ||
| Lima | Jorge Chávez International Airport | |||
| Miami | Miami International Airport | Terminated | ||
| New York City | John F. Kennedy International Airport | [3] | ||